cv
Basics
Name | Sizhao Lu M.D. Ph.D. |
Label | Research Assistant Professor |
sizhao.lu@cuanschutz.edu | |
Phone | (303) 724-4820 |
Url | https://sizhaolu.github.io/ |
Summary | My expertise spans from developing preclinical models of complex diseases to investigating molecular signaling pathways. I have extensive experience in bioinformatics analysis of omics data and its applications in research. I am particularly passionate about uncovering the genetic foundations of diseases and advancing personalized treatment approaches. |
Work
-
2023.10 - Present Research Assistant Professor
Division of Renal Diseases and Hypertension, University of Colorado Anschutz Medical Campus
Junior faculty appointment.
- Focus: Function of perivascular progenitor cells in cardiovascular inflammation and fibrosis
- Key technical achievement: Bioinformatics analysis of scRNA-seq and spatial transcriptomics data focusing on differential expression, enrichment, trajectory and cell-cell communication analysis and visualization using scverse packages.
-
2021.01 - 2023.09 Instructor
Division of Renal Diseases and Hypertension, University of Colorado Anschutz Medical Campus
Junior faculty appointment.
- Focus: Metabolic reprogramming of vascular smooth muscle cells in injury
- Key technical achievement: Assembly of unbiased immunofluorescent image analysis workflow using Cellpose, FIJI, and Python.
-
2015.10 - 2020.12 Postdoctoral Fellow
Division of Renal Diseases and Hypertension, University of Colorado Anschutz Medical Campus
Postdoctoral training in Dr. Weiser-Evans Laboratory.
- Focus: Function of vascular smooth muscle cells and progenitor cells in vascular remodeling
- Key technical achievement: Quantitative imaging analysis of fibrosis
Education
-
2024.09 - 2025.07 Aurora, US
Certificate
University of Colorado Anschutz Medical Campus, Aurora, US
Personalized and Genomic Medicine
-
2010.09 - 2015.08 Omaha, US
-
2005.09 - 2010.07 Qingdao, China
Awards
- 2012.01.01
Graduate Studies Fellowship Scholarship
University of Nebraska Medical Center
The award supported the research of iron homeostasis in metabolic syndrome.
- 2018.07.01
Postdoctoral Fellowship Award
American Heart Association
The three year funding was awarded to support the investigation of the protective role of PTEN against pathological vascular fibrosis and remodeling
- 2019.05.01
ATVB Travel Award for Young Investigators
American Heart Association
The award supported the travel and expense to attend Vascular Discovery 2019.
- 2020.04.02
Travel Award
UCD Postdoctoral Association
The award supported expense to attend Advanced Single Cell RNA-Seq Workshop at UC Davis.
Publications
-
2020.12.03 Smooth muscle–derived progenitor cell myofibroblast differentiation through KLF4 downregulation promotes arterial remodeling and fibrosis
JCI Insight. 2020 Dec 3;5(23):e139445
Identified and characterized a novel smooth muscle-derived vascular progenitor cell population (AdvSca1-SM), demonstrating its role in adventitial remodeling through lineage tracing and RNA-seq.
-
2020.02.01 PTEN (Phosphatase and Tensin Homolog) Protects Against Ang II (Angiotensin II)-Induced Pathological Vascular Fibrosis and Remodeling-Brief Report
Arterioscler Thromb Vasc Biol. 2020 Feb;40(2):394-403.
Systemic PTEN elevation mediates protection against Ang II-induced vascular inflammation and fibrosis predominantly through effects in resident vascular cells.
-
2015.10.02 Saturated Fatty Acids Induce Post-transcriptional Regulation of HAMP mRNA via AU-rich Element-binding Protein, Human Antigen R (HuR)
J. Biol. Chem. 2015 Oct 2;290(40):24178-89
lipids mediate post-transcriptional regulation of HAMP throughPKC- and HuR-dependent mechanisms.
Skills
Molecular Biology | |
RNA and DNA extraction | |
PCR & qPCR | |
Western blotting | |
Molecular cloning | |
Reporter assay | |
Chromatin/Ribonucleoprotein immunoprecipitation | |
Co-immunoprecipitation | |
Immunofluorescent staining | |
Confocal Microscopy | |
Flow cytometry | |
in vivo and in vitro experimental models |
Omics Methods | |
RNA-seq | |
scRNA-seq | |
ATAC-seq | |
Spatial Transcriptomics | |
Metabolomics |
Python | |
Anaconda | |
Jupyter | |
Pandas | |
Anndata | |
Scanpy | |
scvi-tools | |
Scvelo | |
Squidpy | |
cellpose | |
CellRank | |
LIANA | |
PyDESeq2 | |
Pytometry | |
GPU acceleration (Cuda) |
R | |
Tidyr | |
ggplot2 | |
limma | |
Seurat |
Linux/Unix | |
Bash scripting | |
Slurm batch system | |
High-performance computing | |
RNA-seq aligner (STAR, HISAT2) | |
Cell/Space Ranger | |
Git/GitHub | |
Gene Expression Omnibus (GEO) database submission and access |
Languages
Chinese | |
Native speaker |
English | |
Fluent |
Interests
selfhosting | |
Arch Linux | |
NextCloud | |
Miniflux | |
Plex | |
References
Raphael A. Nemenoff, Ph.D. | |
I have had the privilege of mentoring Dr. Lu since he began his postdoctoral training. I am continually impressed by his dedication to scientific inquiry and research excellence. |
Duygu Dee Harrison-Findik, D.V.M., Ph.D. | |
As his PhD mentor, I was impressed by Kevin’s intellect, his thoughtful approach to science and his work ethic. |
Projects
- 2010.09 - 2015.08
A novel link between lipid and iron metabolism.
In my dissertation work, I characterized molecular mechanisms for the induction of hepcidin expression by two lipid species. Specifically, saturated fatty acids induce hepcidin expression by activating the nucleo-cytosolic shuttling of Human Antigen R (HuR), which stabilizes hepcidin mRNA through direct interaction with the AU-rich element in its 3’UTR. In addition, I have discovered that ceramide, a lipid intermediate, activates inflammatory signaling pathway, JAK/STAT3, and STAT3 directly interacts with its response element in the hepcidin promoter, therefore activates transcription.
- Lipid metabolism
- Iron metabolism
- Hepcidin
- 2015.10 - Present
Protective effect of PTEN elevation against pathological vascular fibrosis and remodeling.
We investigated the mechanisms of how genetic and pharmacological up-regulation of Pten gene protect against vascular fibrosis and remodeling.
- Pten
- Vascular remodeling
- Vascular inflammation
- Smooth muscle cells
- 2015.10 - Present
Smooth muscle cell-derived vascular progenitor cells promote cardiovascular remodeling and fibrosis through loss of Klf4 activity and spontaneous differentiation into myofibroblasts.
We used lineage tracing mouse models, combined with RNA-seq, scRNA-seq technologies to examine the function of vascular progenitor cells in cardiovascular remodeling
- AdvSca1 cells
- Vascular remodeling
- RNA-seq
- Progenitor cells