cv

Basics

Name Sizhao Lu M.D. Ph.D.
Label Research Assistant Professor
Email sizhao.lu@cuanschutz.edu
Phone (303) 724-4820
Url https://sizhaolu.github.io/
Summary My expertise spans from developing preclinical models of complex diseases to investigating molecular signaling pathways. I have extensive experience in bioinformatics analysis of omics data and its applications in research. I am particularly passionate about uncovering the genetic foundations of diseases and advancing personalized treatment approaches.

Work

  • 2023.10 - Present
    Research Assistant Professor
    Division of Renal Diseases and Hypertension, University of Colorado Anschutz Medical Campus
    Junior faculty appointment.
    • Focus: Function of perivascular progenitor cells in cardiovascular inflammation and fibrosis
    • Key technical achievement: Bioinformatics analysis of scRNA-seq and spatial transcriptomics data focusing on differential expression, enrichment, trajectory and cell-cell communication analysis and visualization using scverse packages.
  • 2021.01 - 2023.09
    Instructor
    Division of Renal Diseases and Hypertension, University of Colorado Anschutz Medical Campus
    Junior faculty appointment.
    • Focus: Metabolic reprogramming of vascular smooth muscle cells in injury
    • Key technical achievement: Assembly of unbiased immunofluorescent image analysis workflow using Cellpose, FIJI, and Python.
  • 2015.10 - 2020.12
    Postdoctoral Fellow
    Division of Renal Diseases and Hypertension, University of Colorado Anschutz Medical Campus
    Postdoctoral training in Dr. Weiser-Evans Laboratory.
    • Focus: Function of vascular smooth muscle cells and progenitor cells in vascular remodeling
    • Key technical achievement: Quantitative imaging analysis of fibrosis

Education

  • 2024.09 - 2025.07

    Aurora, US

    Certificate
    University of Colorado Anschutz Medical Campus, Aurora, US
    Personalized and Genomic Medicine
  • 2010.09 - 2015.08

    Omaha, US

    Ph.D.
    University of Nebraska Medical Center, Omaha, US
    Biochemistry and Molecular Biology
  • 2005.09 - 2010.07

    Qingdao, China

    M.D.
    Medical College of Qingdao University, Qingdao, China
    Medicine

Awards

  • 2012.01.01
    Graduate Studies Fellowship Scholarship
    University of Nebraska Medical Center
    The award supported the research of iron homeostasis in metabolic syndrome.
  • 2018.07.01
    Postdoctoral Fellowship Award
    American Heart Association
    The three year funding was awarded to support the investigation of the protective role of PTEN against pathological vascular fibrosis and remodeling
  • 2019.05.01
    ATVB Travel Award for Young Investigators
    American Heart Association
    The award supported the travel and expense to attend Vascular Discovery 2019.
  • 2020.04.02
    Travel Award
    UCD Postdoctoral Association
    The award supported expense to attend Advanced Single Cell RNA-Seq Workshop at UC Davis.

Publications

Skills

Molecular Biology
RNA and DNA extraction
PCR & qPCR
Western blotting
Molecular cloning
Reporter assay
Chromatin/Ribonucleoprotein immunoprecipitation
Co-immunoprecipitation
Immunofluorescent staining
Confocal Microscopy
Flow cytometry
in vivo and in vitro experimental models
Omics Methods
RNA-seq
scRNA-seq
ATAC-seq
Spatial Transcriptomics
Metabolomics
Python
Anaconda
Jupyter
Pandas
Anndata
Scanpy
scvi-tools
Scvelo
Squidpy
cellpose
CellRank
LIANA
PyDESeq2
Pytometry
GPU acceleration (Cuda)
R
Tidyr
ggplot2
limma
Seurat
Linux/Unix
Bash scripting
Slurm batch system
High-performance computing
RNA-seq aligner (STAR, HISAT2)
Cell/Space Ranger
Git/GitHub
Gene Expression Omnibus (GEO) database submission and access

Languages

Chinese
Native speaker
English
Fluent

Interests

selfhosting
Arch Linux
NextCloud
Miniflux
Plex

References

Raphael A. Nemenoff, Ph.D.
I have had the privilege of mentoring Dr. Lu since he began his postdoctoral training. I am continually impressed by his dedication to scientific inquiry and research excellence.
Duygu Dee Harrison-Findik, D.V.M., Ph.D.
As his PhD mentor, I was impressed by Kevin’s intellect, his thoughtful approach to science and his work ethic.

Projects